PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029249.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 417aa    MW: 46319.8 Da    PI: 6.779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029249.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
      Pbr029249.1 14 RGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding39.31.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ m+ gRt++++k++w++
      Pbr029249.1  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQMP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.417962IPR017930Myb domain
SuperFamilySSF466891.2E-2611109IPR009057Homeodomain-like
SMARTSM007175.6E-131364IPR001005SANT/Myb domain
PfamPF002496.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241569IPR009057Homeodomain-like
CDDcd001675.20E-101662No hitNo description
PROSITE profilePS5129421.59363117IPR017930Myb domain
SMARTSM007176.3E-1167115IPR001005SANT/Myb domain
PfamPF002496.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2370117IPR009057Homeodomain-like
CDDcd001672.20E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SIIAAQMPGR TDNDIKNYWN TRLKKKLLGR  120
QRKEHQLARK SGLVKQDTIK RSGGVGGNST NSHSAVPATD DQNPYWPELP VLAVPTVLPQ  180
QQQQPCFNDR ASLRKLLIKL GGRFGSDVNH NHETNQVIQG RPANIQPTYQ VLDDDNYSPY  240
AAAAATTQQM DEHYSGKNMQ SLLIPRCGIH ALNDSSPSLS NDVISPHQFA QTHYIVNTDN  300
IDGPGNGIMN NMFQGQGGNY ETDQLKEMVV YNNNDNQHRF DGLEFFCGEE MMVNNRITSS  360
YGESIGWGEM LGCPPVASSS DDYHDSMDRL IMPATPGQEC GFANDQLMSG YPGEAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337125.10.0PREDICTED: snRNA-activating protein complex subunit 4-like
TrEMBLM5XI081e-153M5XI08_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s11440.11e-121(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-79myb domain protein 84